@ Ontology Change Report @ First ontology URI: file:///srv/ncbo/share/env/prod/repository/MS/81/psi-ms.obo @ Second ontology URI: file:///srv/ncbo/share/env/prod/repository/MS/80/psi-ms.obo @ File Written at 2013.11.14 at 08:54:16 PST @ Number of classes changed: 44 @ Number of classes added: 0 @Classes modified from previous --- Class Changed: http://www.geneontology.org/go#MS_1002366 label: combined FDRScore for proteins - SubClassOf('combined FDRScore for proteins' 'search engine specific score for proteins') - SubClassOf('combined FDRScore for proteins' 'search engine specific score') --- Class Changed: http://www.geneontology.org/go#MS_1002362 label: distinct peptide-level probability - SubClassOf('distinct peptide-level probability' 'Expect value') --- Class Changed: http://www.geneontology.org/go#MS_1002380 label: false localization rate - SubClassOf('false localization rate' 'spectrum identification result details') --- Class Changed: http://www.geneontology.org/go#MS_1002382 label: Shimadzu MALDI-7090 - SubClassOf('Shimadzu MALDI-7090' 'Shimadzu MALDI-TOF instrument model') --- Class Changed: http://www.geneontology.org/go#MS_1002358 label: search engine specific score for distinct peptides - SubClassOf('search engine specific score for distinct peptides' 'peptide result details') --- Class Changed: http://www.geneontology.org/go#MS_1002368 label: search engine specific score for protein groups - SubClassOf('search engine specific score for protein groups' 'protein group-level result details') --- Class Changed: http://www.geneontology.org/go#MS_1002374 label: protein group-level FDRScore - SubClassOf('protein group-level FDRScore' 'search engine specific score for protein groups') - SubClassOf('protein group-level FDRScore' 'search engine specific score') --- Class Changed: http://www.geneontology.org/go#MS_1002354 label: PSM-level q-value - SubClassOf('PSM-level q-value' 'PSM-level identification confidence metric') - SubClassOf('PSM-level q-value' ObjectSomeValueFrom('has_units' UO_0000187)) - SubClassOf('PSM-level q-value' ObjectSomeValueFrom('has_units' UO_0000166)) --- Class Changed: http://www.geneontology.org/go#MS_1002346 label: protein group-level result details - SubClassOf('protein group-level result details' 'spectrum identification result details') --- Class Changed: http://www.geneontology.org/go#MS_1002351 label: PSM-level local FDR - SubClassOf('PSM-level local FDR' 'PSM-level result details') --- Class Changed: http://www.geneontology.org/go#MS_1002375 label: protein group-level combined FDRScore - SubClassOf('protein group-level combined FDRScore' 'search engine specific score') - SubClassOf('protein group-level combined FDRScore' 'search engine specific score for protein groups') --- Class Changed: http://www.geneontology.org/go#MS_1002357 label: PSM-level probability - SubClassOf('PSM-level probability' 'PSM-level identification confidence metric') --- Class Changed: http://www.geneontology.org/go#MS_1002364 label: protein-level local FDR - SubClassOf('protein-level local FDR' 'single protein result details') --- Class Changed: http://www.geneontology.org/go#MS_1002377 label: ProteomeDiscoverer:Relaxed Score Threshold - SubClassOf('ProteomeDiscoverer:Relaxed Score Threshold' 'ProteomeDiscoverer input parameter') --- Class Changed: http://www.geneontology.org/go#MS_1002356 label: PSM-level combined FDRScore - SubClassOf('PSM-level combined FDRScore' 'search engine specific score for PSMs') - SubClassOf('PSM-level combined FDRScore' 'search engine specific score') --- Class Changed: http://www.geneontology.org/go#MS_1002355 label: PSM-level FDRScore - SubClassOf('PSM-level FDRScore' 'search engine specific score') - SubClassOf('PSM-level FDRScore' 'search engine specific score for PSMs') --- Class Changed: http://www.geneontology.org/go#MS_1002345 label: PSM-level result details - SubClassOf('PSM-level result details' 'spectrum identification result details') --- Class Changed: http://www.geneontology.org/go#MS_1002350 label: PSM-level global FDR - SubClassOf('PSM-level global FDR' 'PSM-level result details') --- Class Changed: http://www.geneontology.org/go#MS_1002359 label: distinct peptide-level local FDR - SubClassOf('distinct peptide-level local FDR' 'peptide result details') --- Class Changed: http://www.geneontology.org/go#MS_1002376 label: protein group-level probability - SubClassOf('protein group-level probability' 'search engine specific score for protein groups') --- Class Changed: http://www.geneontology.org/go#MS_1002352 label: PSM-level p-value - SubClassOf('PSM-level p-value' 'PSM-level identification confidence metric') --- Class Changed: http://www.geneontology.org/go#MS_1002371 label: protein group-level p-value - SubClassOf('protein group-level p-value' 'protein group-level identification confidence metric') --- Class Changed: http://www.geneontology.org/go#MS_1002360 label: distinct peptide-level FDRScore - SubClassOf('distinct peptide-level FDRScore' 'search engine specific score') - SubClassOf('distinct peptide-level FDRScore' 'search engine specific score for distinct peptides') --- Class Changed: http://www.geneontology.org/go#MS_1002370 label: protein group-level local FDR - SubClassOf('protein group-level local FDR' 'protein group-level result details') --- Class Changed: http://www.geneontology.org/go#MS_1001870 label: distinct peptide-level p-value + SubClassOf('distinct peptide-level p-value' 'peptide identification confidence metric') - SubClassOf('distinct peptide-level p-value' 'PSM-level identification confidence metric') --- Class Changed: http://www.geneontology.org/go#MS_1002378 label: ProteomeDiscoverer:Strict Score Threshold - SubClassOf('ProteomeDiscoverer:Strict Score Threshold' 'ProteomeDiscoverer input parameter') --- Class Changed: http://www.geneontology.org/go#MS_1002348 label: protein group-level identification confidence metric - SubClassOf('protein group-level identification confidence metric' 'protein group-level result details') --- Class Changed: http://www.geneontology.org/go#MS_1001198 label: protein identification confidence metric + SubClassOf('protein identification confidence metric' 'protein result details') - SubClassOf('protein identification confidence metric' 'single protein result details') --- Class Changed: http://www.geneontology.org/go#MS_1002361 label: distinct peptide-level combined FDRScore - SubClassOf('distinct peptide-level combined FDRScore' 'search engine specific score') - SubClassOf('distinct peptide-level combined FDRScore' 'search engine specific score for distinct peptides') --- Class Changed: http://www.geneontology.org/go#MS_1002365 label: FDRScore for proteins - SubClassOf('FDRScore for proteins' 'search engine specific score for proteins') - SubClassOf('FDRScore for proteins' 'search engine specific score') --- Class Changed: http://www.geneontology.org/go#MS_1002381 label: MALDI Solutions LC-MALDI - SubClassOf('MALDI Solutions LC-MALDI' 'Shimadzu Corporation software') - SubClassOf('MALDI Solutions LC-MALDI' 'acquisition software') - SubClassOf('MALDI Solutions LC-MALDI' 'data processing software') - SubClassOf('MALDI Solutions LC-MALDI' 'analysis software') --- Class Changed: http://www.geneontology.org/go#MS_1002373 label: protein group-level q-value - SubClassOf('protein group-level q-value' 'protein group-level identification confidence metric') - SubClassOf('protein group-level q-value' ObjectSomeValueFrom('has_units' UO_0000187)) - SubClassOf('protein group-level q-value' ObjectSomeValueFrom('has_units' UO_0000166)) --- Class Changed: http://www.geneontology.org/go#MS_1002367 label: probability for proteins - SubClassOf('probability for proteins' 'Expect value') --- Class Changed: http://www.geneontology.org/go#MS_1001214 label: protein-level global FDR + SubClassOf('protein-level global FDR' 'spectrum identification result details') - SubClassOf('protein-level global FDR' 'single protein result details') --- Class Changed: http://www.geneontology.org/go#MS_1001868 label: distinct peptide-level q-value + SubClassOf('distinct peptide-level q-value' 'peptide identification confidence metric') - SubClassOf('distinct peptide-level q-value' 'PSM-level identification confidence metric') --- Class Changed: http://www.geneontology.org/go#MS_1002379 label: ProteomeDiscoverer:Peptide Without Protein Cut Off Score - SubClassOf('ProteomeDiscoverer:Peptide Without Protein Cut Off Score' 'ProteomeDiscoverer input parameter') --- Class Changed: http://www.geneontology.org/go#MS_1001872 label: distinct peptide-level e-value + SubClassOf('distinct peptide-level e-value' 'peptide identification confidence metric') - SubClassOf('distinct peptide-level e-value' 'PSM-level identification confidence metric') --- Class Changed: http://www.geneontology.org/go#MS_1002369 label: protein group-level global FDR - SubClassOf('protein group-level global FDR' 'protein group-level result details') --- Class Changed: http://www.geneontology.org/go#MS_1002363 label: search engine specific score for proteins - SubClassOf('search engine specific score for proteins' 'single protein result details') --- Class Changed: http://www.geneontology.org/go#MS_1002349 label: value greater than zero but less than or equal to one - SubClassOf('value greater than zero but less than or equal to one' 'domain range') --- Class Changed: http://www.geneontology.org/go#MS_1002347 label: PSM-level identification confidence metric - SubClassOf('PSM-level identification confidence metric' 'PSM-level result details') --- Class Changed: http://www.geneontology.org/go#MS_1002372 label: protein group-level e-value - SubClassOf('protein group-level e-value' 'protein group-level identification confidence metric') --- Class Changed: http://www.geneontology.org/go#MS_1002353 label: PSM-level e-value - SubClassOf('PSM-level e-value' 'PSM-level identification confidence metric') --- Class Changed: http://www.geneontology.org/go#MS_1001364 label: distinct peptide-level global FDR + SubClassOf('distinct peptide-level global FDR' 'spectrum identification result details') - SubClassOf('distinct peptide-level global FDR' 'peptide result details') @New Classes